Skip to main content

Thread: Problems installing using make

-

hi all,

i've gotten great board thought i'd ask again.

i'm trying install bwa - burrows wheeler alignment tool. here: http://bio-bwa.sourceforge.net/bwa.shtml if you're interested.

when cd folder , type make errors, , have no idea make of them.

code:
jill@jill-desktop:~/desktop/bwa/bwa-0.5.7$ make  make[1]: entering directory `/home/jill/desktop/bwa/bwa-0.5.7'  make[1]: nothing done `lib'.  make[1]: leaving directory `/home/jill/desktop/bwa/bwa-0.5.7'  make[1]: entering directory `/home/jill/desktop/bwa/bwa-0.5.7/bwt_gen'  gcc -c -g -wall -o2 -m64 -dhave_pthread   bwt_gen.c -o bwt_gen.o  in file included /usr/include/features.h:378,                   /usr/include/stdio.h:28,                   bwt_gen.c:25:  /usr/include/gnu/stubs.h:9:27: error: gnu/stubs-64.h: no such file or directory  bwt_gen.c: in function ‘bwtincconstructfrompacked’:  bwt_gen.c:1416: warning: ignoring return value of ‘fread’, declared attribute warn_unused_result  bwt_gen.c:1432: warning: ignoring return value of ‘fread’, declared attribute warn_unused_result  bwt_gen.c:1447: warning: ignoring return value of ‘fread’, declared attribute warn_unused_result  make[1]: *** [bwt_gen.o] error 1  make[1]: leaving directory `/home/jill/desktop/bwa/bwa-0.5.7/bwt_gen'  make: *** [lib-recur] error 1  jill@jill-desktop:~/desktop/bwa/bwa-0.5.7$
anyone recognize these errors? or have idea should them?

appreciated. need project school.

in advance!

it's in repos:

http://packages.ubuntu.com/lucid/bwa

if want compile source, you'll need bild-essential.


Forum The Ubuntu Forum Community Ubuntu Official Flavours Support General Help [ubuntu] Problems installing using make


Ubuntu

Comments

Post a Comment

Popular posts from this blog

CS5 Adobe Media Encoder: Encode failed because the source duration is nil.

-
i've been running production premium on new windows 7 64bit, 6gb i7 system several weeks , haven't had issues exporting media encoder.   i installed trial version of dreamweaver without of add-on's thought might mess licensed installation.   every attempt export -> media -> queue get's following error in ameencodingerrorlog.txt   - source file: c:\users\rob\appdata\local\temp\someproject.prproj - output file: c:\users\rob\videos\someproject.mov - preset used: custom - video: - audio: - bitrate: - encoding time: 00:00:00 7/8/2010 10:14:34 : encoding failed ------------------------------------------------- encode failed because source duration nil.   doing export directly pp works without error, don't want wait each export complete.   any ideas other reinstall pp?   tia i noticed range selector triangles right next each other.   changed source range: work area   not sure why default set 0 range. doesn't remember last setting when selected entire sequ
Read more

cf_sql_integer vs cf_sql_bigint vs cf_sql_int??

-
i have id (primary key) set bigint in sql server. have query following: where whateverid = <cfqueryparam cfsqltype="cf_sql_integer" value="#url.id#"> i got invalid data type it. tried: where whateverid = <cfqueryparam cfsqltype="cf_sql_bigint" value="#url.id#"> i still got invalid data type it. tried: where whateverid = <cfqueryparam cfsqltype="cf_sql_int" value="#url.id#"> and worked. the weird thing cf_sql_int not listed being accepted: http://www.adobe.com/livedocs/coldfusion/5.0/cfml_reference/tags79.htm can explain me. > whateverid = <cfqueryparam cfsqltype="cf_sql_bigint" value="#url.id#"> what value of #url.id#? had no problems either using cf8. > weird thing cf_sql_int not listed being accepted: iirc, when pass in invalid sql type cf uses default: cf_sql_char, accepts anything. ms sql implicit convert() right type , why works. More discussions in Data
Read more

localhost/joomla15/administrator doesnt work - Joomla! Forum - community, help and support

-
hi, i'm starting , address http://localhost/joomla15/administrator doesn't work (it stays blank, no error or anything). wonder if have change in address or somewhere else. joomla installed through web-host dreamhost.com , didn't have much. i appreciate help. silvia http://localhost tells browser not go out internet use localized web server installed on pc. lack of better description, localized web server doing coding , test site development on local pc using software turns pc "local" web server; hence, term - localhost. you mentioned dreamhost.com installing joomla. assume mean installed joomla on hosting account? so need access joomla installation by: http://www.yourdomain.com/joomla15/administrator Board index Joomla! Older Version Support Joomla! 1.5 Installation 1.5
Read more